Boise called and was issued the time out. It's a fairly routine occurrence for refs to award the standard 30 second time out to a team to only then be informed to make it a TV time out. All that does is change the length of the time out.
In making the change he made it sound like it was now just a TV time out and not a Boise time out, but that's not what happened. Boise was deducted the time out, which is why they only had two of them at the end.